rs50553289 SNP Detail

Summary

• ID
  rs50553289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24825773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAGATG TCTCTAGGCT
  AAGCGTCCAC CAGCAGCAGG CAAACGGGGG CCTCAGGTTG GTCCCGTGTC TATTCCAGAG
  GCTTAGAAGC CTACCAAAGC CCAGGGTCCT TCACTCACCC ACCTCCCAGA AGCAAAGCCA
  CCTCCCAGTG ACACCTTCAA CTCACTAACA CTCCCAAGGG CACACTGAGT CCTTGGGGCC
  R
  GCAGCTACAC TGAACAGGCT ACCATTAAGC CACAGAAGGG CCCGTGCACA TCCAAATGCC
  TGTACGCGTG CCCTGGCCAG CAAATTCATG AGAGCTGACT TCATGCTCGT GTGATTCTCA
  ATCGAAACCC AAACAAGCCC TATACTTTGC CACCCCAAAC AGTGAAGGCA GGTGTGCTGG
  GGTTCCTGGC TCCCCAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148097823	ENSMUSSNP1297876	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50553289					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24825773 () rs orientation: forward

Symbol	Name	Function Class
Gm71653	predicted gene, 71653	1162 bp upstream
Rr608374	regulatory region 608374	309 bp distal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	1871 bp downstream
Tssr50356	transcription start site region 50356	1884 bp downstream