rs50554445 SNP Detail

Summary

• ID
  rs50554445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138113719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGCATA CCTAGCTCTA
  ATTATTAATA TATATAATGT CTTCAGAGCT AGGTAAATAA CTTGATGATG GAGAGAAGTG
  CTAGCTTGCA TAAGGCATTG GGTTCTACCC CCCTCCCCCA GCACAGAAAG AAAAATCTAT
  AGTGGTAGAA CAAGCATACA CAAATAGAGA ATCAAAATCT TGTCTCAGCT TTGCTATCAA
  Y
  TTACACTCTA GTACACACTG GATCTGATCT GCCAAGACAC TGCTTTCTTC ATACATAAAC
  AAGAACTCAG GCAGATTGTT CTCTGTGTTT TTGATTGTAA TGGCTATTCC TGGTTGTCAA
  CTTGACTCTA TCTGGAATGA ACTACAATCC ACCTGTGATC CAGATCTTGA GGCTGGAAGA
  AGATTCTGAC CTGGATCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60847516	NES16003391	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50554445					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847516	NES16003391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138113719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16853	CpG island 16853	1328 bp proximal
Rr399441	regulatory region 399441	1367 bp upstream
Rr623030	regulatory region 623030	956 bp proximal
Rr623031	regulatory region 623031	1595 bp proximal
Tssr49413	transcription start site region 49413	1454 bp upstream
Tssr54072	transcription start site region 54072	1394 bp downstream
Zscan21	zinc finger and SCAN domain containing 21	1446 bp upstream