rs50554536 SNP Detail

Summary

• ID
  rs50554536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44983202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGTCCT CCCTGAGGAA
  ATTGTATGCC TCATTTTCCA CTATGATCAG TGAATACACA CTATGGACAA GAATGGACTG
  TCTCTCTCTC TCTCATCAAG AATTATCTTG GGAACATGGA GAAAGCCTTC GTCTACAGTA
  CACCTAATTC TCCCACAGAA GGGCACTCTG TGCTCCCTTC AGTCCCAAGT CCTCCACTTA
  R
  GAGTCAGAGA ACCCCGTTCC TCACCAGGCT GGTTCCTCGC CCATTTTAGG CTGAGCACTA
  TAACAGCACT TCTGGCAAGC CCAGCACCTA ATGATGGCTT AGGGTAACCT ACAGTCTAGG
  GTCCTGCTTT CCTCTTTTTG TCTGCCTGAG CAGAGTTCAC ACACACCAGC AGCAAGACAG
  GATGCAAATC TATACCTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52260078	NES15311608	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50554536					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52260078	NES15311608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44983202 () rs orientation: forward

Symbol	Name	Function Class
Prep	prolyl endopeptidase	within coordinates
Rr227768	regulatory region 227768	within coordinates
Rr227769	regulatory region 227769	599 bp proximal
Rr227770	regulatory region 227770	1999 bp proximal
Tssr93183	transcription start site region 93183	407 bp upstream
Tssr93184	transcription start site region 93184	426 bp upstream
Tssr93185	transcription start site region 93185	475 bp upstream