rs50556934 SNP Detail

Summary

• ID
  rs50556934
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102982258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGATAA ACTTTAGCTT
  AACATAATGT GATGACGATT ATGTATTTAT TCCAAGTGCT TCCTAAAACC ATTTGAAATG
  GCTGGATGAT ATTTGAGTTT TCTTAGTTAT CTCCTGCGGT TTTTTTTTTA AACCATATTT
  TACATGTATA AACGTCCTCC TGACCTTATT TGCATCTAAA ACTTTCAGAA ATGGTGGTTC
  M
  GTGGATGCTA CCCACTTGTT CGGTGCTACC AAATAAGCTG CTTTGTTTGC CCAGTCCCAG
  CATTGTTTGA GAGTTCTAGT GCTCTTCAAC AGATTAATCC TTTGTTTCCC TTTAAATTTC
  CATCCTACAA GTACCTTTAG CGTCTCAGTA GTGGAGTGTG AGCTTGACAT TAGCACACAT
  CCCAGGTTCA ATTCCCACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60430143	NES15929898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50556934					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430143	NES15929898	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102982258 () rs orientation: forward

Symbol	Name	Function Class
Ampd1	adenosine monophosphate deaminase 1	within coordinates
Tssr30962	transcription start site region 30962	909 bp downstream
Tssr30963	transcription start site region 30963	894 bp downstream