rs50557338 SNP Detail

Summary

• ID
  rs50557338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110365989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAAGCA TACTTTTTAT
  AATCTTACAG ATTCACTATC TCAAATTTAA AATGTCACAT ATTTTAAAAA TAATTGCAAG
  GATAGTTGAC GAAATACTCA CTGAGAACAT TGATTTCAGA CAAAATCATT TTCCTGTGAC
  CCTTCACATT TACAGAATTG GGAGGTGCTA TTTGAGCAGA ATTATAATTT AATAAGTGCA
  R
  AGACAGAGTT CTGTTTATCT TTGGGTATCT ATCTTCTTAG GAAACAAATA ACAACAGCCA
  GAGTCCTGGA GAGATGGCTC AGCAGTCAAG AGTACTTGTT CTTGCAGAAG ATCCAAGTTC
  CATTCCCAGA ATCTACTCGG TGACGTATAA CACTCATAAC TCCAGTTCTA GGGGAGACAA
  TGCCCTCTTT TGACTTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398752	CHEV_7_117910296	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50557338					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110365989 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1424 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	Noncoding-Transcript-Variant
Cpgi19579	CpG island 19579	1301 bp proximal
Rr653308	regulatory region 653308	1011 bp proximal
Rr653309	regulatory region 653309	1639 bp proximal
Tssr68503	transcription start site region 68503	1281 bp upstream
Tssr68504	transcription start site region 68504	1324 bp upstream
Tssr68505	transcription start site region 68505	1356 bp upstream
Tssr68506	transcription start site region 68506	1387 bp upstream
Tssr68507	transcription start site region 68507	1833 bp upstream