rs50557451 SNP Detail

Summary

• ID
  rs50557451
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:125143344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTATTTTTC TATTATAAGC TTTATAAATA AAGGTGCTAA
  AATATAAAAC TCTAATATGC ACATATAAAT CTGTTTCTTT GTAAGATGTT TGTAGTCAGT
  W
  GTAGGTAATT CTATTTGGAT TAAAAGAGCT GAGCTGGGTG GCACAGGACT GTAATCCAGG
  CAGCTCAGGA ATCCAAGGCA GGAATGTCAA GCTCAAGGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147698315	ENSMUSSNP6616241	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50557451					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:125143344 () rs orientation: forward

Symbol	Name	Function Class
Gm45604	predicted gene 45604	1394 bp upstream
Slc16a7	solute carrier family 16 (monocarboxylic acid transporters), member 7	within coordinates
Tssr96086	transcription start site region 96086	1493 bp upstream
Tssr96087	transcription start site region 96087	1521 bp upstream
Tssr99673	transcription start site region 99673	1317 bp downstream
Tssr99674	transcription start site region 99674	1330 bp downstream
Tssr99675	transcription start site region 99675	1334 bp downstream
Tssr99676	transcription start site region 99676	1368 bp downstream