rs50557464 SNP Detail

Summary

• ID
  rs50557464
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150839863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTGACA TGGTTTCATC
  TAGCCTGGCA GTGTCTAAGT GAGAGGAGAG GAAGGCTGCA TTGTTGAGTC CATGAGTAGC
  TTCTACCTCT GCTCTTATGG CTACCCCTTT ACATGATCAC AGAGTCAGCC CAACAAATAA
  CTACTTGAAA AGATCTTGGG TTCAAATGTC AAATAGAGTA AATATCTACA AGCCTAATTT
  W
  CCTAATCAAA ATCACCTTGG AGTCTTCAAA ATGTAGGGTG AGGGATGCTC CAGGAGAATC
  CTGGGAACTA CTGTCCTCCA AAAGGAGGAT GCAGACATTG CCCTCAACCA AGCAGGCTAC
  AAAACGAAAC CTGAGTGTCT CCCACAGTTT ACTGCCACCC AGTGCAACTA AAAGCTGCTC
  AGAGACCCAA TGAACAGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858721	NES15999364	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50557464					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858721	NES15999364	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150839863 () rs orientation: forward

Symbol	Name	Function Class
Rr625814	regulatory region 625814	722 bp proximal