rs50557763 SNP Detail

Summary

• ID
  rs50557763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46993344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGGCT GGTGGTCTCC
  TGGTCTACAG AGCAAATTCC AGGAGAGTCA GGGCTGCACA GAGAAAAACC GAATACAATG
  CCCCCCATTC TCCCCCTCAC CCCCAAACAA GATCACTTTA TTCCTAAAAA TTTCGTTACC
  TGAGATTTTG TGGACTTCAG AATCTAAGTG AAATGCTGTC TCACTAGACT TGGGAATGGG
  Y
  AGACCTGGCA ATAATGAGGG CGTGATGATG TGTTGGGGGT CTTGGGCTGA CTGAGGCACT
  AGGGAGAGAG GAGCTGGTCC CGTTCTTTTT TTTTTTTTTT TTTTTTTTTT TGGGTTTTCG
  AGACAGGGTT TCTCTGTATA GCCCTGGCTG TCCTGGAGCT CACTTTGTAG ACCAGGCTGG
  CCTCGAACTC AGAAATCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758055	NES17350927	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50557763					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758055	NES17350927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46993344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	842 bp distal
Klhdc3	kelch domain containing 3	1504 bp upstream
Mea1	male enhanced antigen 1	within coordinates
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	573 bp downstream
Rr405317	regulatory region 405317	1328 bp downstream
Rr527795	regulatory region 527795	1228 bp distal
Rr527796	regulatory region 527796	461 bp proximal
Tssr5136	transcription start site region 5136	1637 bp upstream
Tssr5137	transcription start site region 5137	1474 bp upstream
Tssr144872	transcription start site region 144872	1940 bp downstream
Tssr144873	transcription start site region 144873	1407 bp downstream
Tssr144874	transcription start site region 144874	1234 bp downstream
Tssr144875	transcription start site region 144875	384 bp downstream
Tssr144876	transcription start site region 144876	378 bp downstream
Tssr148367	transcription start site region 148367	1684 bp upstream
Tssr148368	transcription start site region 148368	1662 bp upstream
Tssr148369	transcription start site region 148369	1643 bp upstream
Tssr148370	transcription start site region 148370	1584 bp upstream
Tssr148371	transcription start site region 148371	1559 bp upstream
Tssr148372	transcription start site region 148372	1485 bp upstream
Tssr148373	transcription start site region 148373	513 bp upstream
Tssr148374	transcription start site region 148374	494 bp upstream