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rs50558003 SNP Detail
Summary
  • ID
    rs50558003
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:30527825 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTTAT GGAGGGATGA TCGTATGCAT
    R
    TGATGCTACT GAGCCTGATG TGTTG                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
CAST/EiJ
DBA/2J
LG/J
MOLF/EiJ
PWD/PhJ
SM/J
WSB/EiJ
ss52363858 NES15389131 PERLEGEN MM_PANEL2 f SNP G A A G
ss137553593 ENSMUSSNP5264619 ENSEMBL ENSEMBL_Sanger f SNP G G
ss323988627 CHEV_12_31162691 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
A/J
CAST/EiJ
DBA/2J
LG/J
MOLF/EiJ
PWD/PhJ
SM/J
WSB/EiJ
rs50558003 SNP G G G G A A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52363858 NES15389131 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:30527825 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm28806 predicted gene 28806 1376 bp downstream
Tssr113087 transcription start site region 113087 1237 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory