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rs50559014 SNP Detail
Summary
  • ID
    rs50559014
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:5272684 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGACCTCAGA CTGTGTTCTT
    CCCTCAAAGT ATCACAACCT ACAACCTCTG CACTGCTCAG GCCTAACTCT GGTGACCCTC
    TTCCCAGAAG CCTGTCTTGA TTACCCAGCC TGTGAGGACA GTGGTGCCAG GCTGCCCTAG
    CTCGGCCCAC TCTCAGTGCA GACCCTATGA CACAATGGTT ACGTAACCAG TCCTTTACAC
    R
    GCTCGACTCA GTGGATGCCA GCAGCTGTAG GTTTTTTTTT CTTTCTTCCT TCTCCCATTA
    TTTGCATCTC AACTTACCCT GTCTGACCCA AACTACTCTA GGGGTAACTA TTGGGACCCC
    CAGTCATATC TGGTGCTGGT GTTAATAATA GCTGTCTCAG AAAGCCCACA TTCACTGAAA
    TGAAAGTAGC CGCTGCTGGC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61341850 NES16953083 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G A G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs50559014 SNP G G G G G G G G G G A G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61341850 NES16953083 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:5272684 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Klhl29 kelch-like 29 within coordinates
Rr263718 regulatory region 263718 939 bp proximal
Rr267587 regulatory region 267587 685 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory