rs50559388 SNP Detail

Summary

• ID
  rs50559388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69001232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGAACTTA AAACTTAGAA GAGGGGAGCT TGGGAGGGTT
  GAATAATAGG AAATCCAGTT CGCACTGTTG GTCAAAATAA AAAACCTCCT TTCTAGGCAC
  Y
  TATTTGCTAC CTGCCTCTAA TAGCTGATCT ACTTCGAAGT GAAAAGTGCA TTCTCGTTGG
  CGCCGTGGCT TAGCTGGTTA AAGCGCCTGT CTAGTAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132349045	ENSMUSSNP961901	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323727515	CHEV_11_68923908	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50559388					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69001232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	453 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	513 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	59 bp upstream
Per1	period circadian clock 1	446 bp downstream
Rr402659	regulatory region 402659	166 bp upstream
Rr449875	regulatory region 449875	within coordinates
Rr449876	regulatory region 449876	166 bp proximal
Rr449877	regulatory region 449877	1576 bp proximal