rs50561286 SNP Detail

Summary

• ID
  rs50561286
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48956195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCCCATA GTCTTCTGAG
  CCCAGACAGG AAAATGCATG CCTGGGTCGT GTAATTCAGA GGGGCTCATG TGTTCCCCCA
  AGTGAGCCTC AGCCCCTTCT ATAGAGTCCG AGGGGCGGTA CATACATTGC AAATCAATGT
  ATCAAAGCTG CCAGCAACCT GCTGTGAACT TGCTCTTCTA GGGATATGAC CTTAGTGGAC
  M
  CAAGGACTGC ATCAGTAAGG GCCTTTGCTC ATAGCTGACT CCTGGTTTAA ATTCTAACCT
  TACCATTTAC TAAATCTGAC CCCGTTGCCT TTTCTGTAAG AGGGTTTTGC AGTTCTCTGT
  CCTCCTGTAA AGGTGTTATA ACGTAGTCTG TATCCAGGAT CCAGCCTAGA GTCTGAGTCA
  CTGGTGTAGA TTAAGCGGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61005699	NES16117348	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50561286					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61005699	NES16117348	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48956195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	1654 bp distal
Nav2	neuron navigator 2	within coordinates
Rr157124	regulatory region 157124	1206 bp proximal
Rr165172	regulatory region 165172	1390 bp proximal
Rr167850	regulatory region 167850	1194 bp distal