rs50562040 SNP Detail

Summary

• ID
  rs50562040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83429151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAATTT AGTTCCTCTT
  GCTTGACCAG CGAGAGCTTT GACTAAGCCA TCTCCCCAGC TGACCTTTTG TGTATATACA
  ATGGTTATCA AATAAAATAT TTCAAACCAT GGTCAAGGCA GGGAAAGTTT TAAAGGCGAC
  TGTATTTTAC TTTCCCTGTC CCCTCTCCTA AAGATCAGCA CTTCTTCCTT CTCAGTACCT
  R
  AGATGCCCTG GCCACTGCTG CTTTCTTTTA CAGCTCATGA GGAGTGTTGG CAGGAGATAG
  GCGTCTCAGG GGAGTCTAGA AACCACCATC TGTTTTGTGT TTGCGCTGTA TCTGTCGGTG
  ACGATATCTG TCAAGCAGTT AGATTCTTCT AAATTTTGTC CACTTACTTT TCAGGCCTAA
  TGATGCTAAG ATGACCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60760569	NES16400499	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50562040					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60760569	NES16400499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83429151 () rs orientation: forward

Symbol	Name	Function Class
Gm69621	predicted gene, 69621	263 bp upstream
Gm71033	predicted gene, 71033	172 bp upstream