rs50562072 SNP Detail

Summary

• ID
  rs50562072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156880507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTTTAGTT TTTCTGGGTA GCCTGTCATG GGTATCAAGG
  CTAAGCTTCT CAAAAGTTGA TCAAAAAGTT TAAAATATTT TTTTAAATTT AATATTATGG
  R
  CTGGTGGTGG GCGGTGATGA CACACACCTT TAATCCCAGC ATTTGTGGGG GGTGGGGGGG
  GCAGAGGCAG GCAGATCTCT ATATGAGTTC AGGGTTAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148090100	ENSMUSSNP5078749	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320583694	CHEV_2_156864323	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50562072					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156880507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12565	CpG island 12565			1329 bp proximal
Mtcl2	microtubule crosslinking factor 2			Intron
				Noncoding-Transcript-Variant
Rr568412	regulatory region 568412			2000 bp proximal