rs50562986 SNP Detail

Summary

• ID
  rs50562986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156194220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACGA TGATTGGCCG CCCCTAGAAC
  Y
  ATTGGGGAAT GTAGTCGTTT CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148126479	ENSMUSSNP1413105	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321445499	CHEV_4_155483872	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50562986					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156194220 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	235 bp upstream
Cpgi15500	CpG island 15500	within coordinates
Gm69135	predicted gene, 69135	25 bp upstream
Rr398931	regulatory region 398931	within coordinates
Tssr40790	transcription start site region 40790	208 bp upstream
Tssr40791	transcription start site region 40791	250 bp upstream