ACTGTTCTGT GACCACTGGT AAGGCAGTTA TAGCATTAGA CCATAATATC AGTTGGGGGT GGGTGGGTAA CAGACCCTGA AATAATACAA CTAGGTTATG GCACTTAGTT ACTATAAGCC ACCAGGCTAG AACTTCCAAG AAGATTGAAT GGCAGTTAGA GGGCCCTGAC CTCAAGGACT ATGAGGCTGG GATCCTTGTG R GCAAAGCAAA CAGGCAGTCA AGAGGCTGTA GCCCCACATC AAGAAGCAAA GAAGTCAAGG GGAAGAGGGA TGTATTGCAA TGGTTAGAGT ACCCATCTAA CATCCCTGAG ACCCTGGGTT GGGTCCCTTT CGGTGCATAA ACTGGATGTG GTGACAAATA CCTGTGATCC CAGCTCCTGA GAAGCAGAGG CAGAAGTTGA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60455097 | NES16441078 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs50564184 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60455097 | NES16441078 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr16:48123607 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Tssr138650 | transcription start site region 138650 | 619 bp upstream | ||||||
Tssr138651 | transcription start site region 138651 | 670 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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