rs50565596 SNP Detail

Summary

• ID
  rs50565596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67621770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTTGGT AACATAACTC
  AAAGGCTCTA AGACACTAGA GAGGTGGCTT TGAAGAATGA GATAGCATCA CAATGGGAAG
  GGGAGGGGGC TGGGACACAG ATCTCCAAAC CTCCCAGCAG CAAAGCGCTG GCTTCTAGGA
  ACACTCCAAC AAAACTATGG TTGTCTTTTC AAAGAACCTG GCCGAACCTT AAAGCTTGCT
  Y
  GATGAATTCC TGATTTGTAT TTGTGAATTC AATGATATGA AAAGGCAAGG TATACCCTTC
  CCTAAAGAAT GAAGGGAAAA CCATAGGCCC AGGCCATTAG CACATCCCAT GAGAGCAGCT
  CAGAGACCTG CAGTGGGTGC CACAGGTCAT AGTCTAAAGA AACAACAACT TGGGGCTGGT
  TTTGCCAGGT TGAGAGAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61411913	NES16794254	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C		C	C	C		C
ss322992316	CHEV_9_67562295	CHEVERUD	SCREENING_POP	f	SNP							C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50565596					SNP	T	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61411913	NES16794254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67621770 () rs orientation: forward

Symbol	Name	Function Class
Gm67856	predicted gene, 67856	within coordinates
Tssr90351	transcription start site region 90351	992 bp upstream