rs50565674 SNP Detail

Summary

• ID
  rs50565674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185320855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCACAGA TGTTTCAGAC
  CTGTTTGATG TAGAGCATTG TGCTGGAATC CAGCACAATG AGATGCAATC CATGTCCCCA
  GGAAATCTGG GCTCAGTGCA GGACACCTCC CTCATTTGAT ACATGGAGTT TTAGCAACGA
  GGAAGCCTGC GGGAGGCTTA AGTGACATCT CCTCACACAT GCAATGATGA TGACGGGAAC
  Y
  GATTATAACA CAATACAGTT GTCAAAATAT TAAACGGACA CATTAGTGCT AAGTGCTAAG
  TACTGAACAT GTAAACCATG GTTCCTGGTG GTCACAGATC CTTCTCAGGG AATTTGCCCC
  AACACAGATC TTGCCAGGAG GACAAGGATG GGCCTCACTG TATCCTTTCA TCTCCCAGGA
  AAAGTTGGAT AAAAGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146437028	ENSMUSSNP5799090	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320177571	CHEV_1_187412537	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50565674					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185320855 () rs orientation: forward

Symbol	Name	Function Class
Rr425415	regulatory region 425415	within coordinates