rs50565703 SNP Detail

Summary

• ID
  rs50565703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79176745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATAAAAC TCTGCAAAAA
  CCAGGTCCTC TGCAAGAGCA ATGTGTGTCC GTAATTGCAG GGCCATCAGC CACTATTTAC
  TATTAAAACC ATGAAAAGCT CCTTGATATT TTTGGATTTG TTTCAGCCTC CTTTTAATTT
  AGAATGATCA GAATGTGTTG ATATAGTTGG CCTCTAGTAA CCAGTGCTCT TATTGTTCAT
  R
  TAAAGAACTG AAAACAGGGG CCCAGAGAGG TAGCTGAACA GTTAAGAGCA TCTGTTACTT
  TTGCTAAGGG CTTGGGTTTG ATTCTCAGCA CTCACATGGT GGCTCATAAA GGTCTGTAGT
  AACTCTAGTT CCAGCAAATC CTATATCCAC TTCTGACTTC CCTGGGCACC ATGAATGTCT
  GTGGTGCACA AACATATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61653379	NES17602699	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50565703					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653379	NES17602699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79176745 () rs orientation: forward

Symbol	Name	Function Class
Arg2	arginase type II	817 bp upstream
Cpgi4801	CpG island 4801	392 bp proximal
Rr468550	regulatory region 468550	404 bp proximal
Tssr3873	transcription start site region 3873	778 bp upstream
Tssr114077	transcription start site region 114077	829 bp upstream