rs50566483 SNP Detail

Summary

• ID
  rs50566483
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA TCTGGGGCCA ACCAAACCCA
  K
  CCCAAAGTCC CTTGGCGTCC CCAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138742400	ENSMUSSNP3177388	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324175499	CHEV_12_114668233	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50566483					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393642 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	506 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	189 bp upstream
Ighj2	immunoglobulin heavy joining 2	507 bp upstream
Ighj3	immunoglobulin heavy joining 3	890 bp upstream
Ighj4	immunoglobulin heavy joining 4	1455 bp upstream
Tssr115504	transcription start site region 115504	205 bp upstream
Tssr118005	transcription start site region 118005	1475 bp upstream
Tssr118006	transcription start site region 118006	1444 bp upstream
Tssr118007	transcription start site region 118007	1398 bp upstream
Tssr118008	transcription start site region 118008	1371 bp upstream
Tssr118009	transcription start site region 118009	1360 bp upstream
Tssr118010	transcription start site region 118010	1222 bp upstream
Tssr118011	transcription start site region 118011	1124 bp upstream
Tssr118012	transcription start site region 118012	889 bp upstream
Tssr118013	transcription start site region 118013	874 bp upstream
Tssr118014	transcription start site region 118014	770 bp upstream
Tssr118015	transcription start site region 118015	674 bp upstream
Tssr118016	transcription start site region 118016	520 bp upstream
Tssr118017	transcription start site region 118017	180 bp upstream
Tssr118018	transcription start site region 118018	354 bp downstream
Tssr118019	transcription start site region 118019	371 bp downstream
Tssr118020	transcription start site region 118020	427 bp downstream
Tssr118021	transcription start site region 118021	567 bp downstream
Tssr118022	transcription start site region 118022	599 bp downstream
Tssr118023	transcription start site region 118023	764 bp downstream