rs50566499 SNP Detail

Summary

• ID
  rs50566499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18477025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTAGGAA ATGGGCTAAA
  AGTGGATGTT TTCAAAGCTT GGGAAACCAC CTCGCCATGG GAGGCTAGAG CCTACAGAGG
  AACCTGCAGC TGGCATCACA ATGTTTAAAG AACATTACAG CTTATTGGTT CTATGTGAGA
  AGAGACAAGA TTTCTAGTGT GTTGTTTCTT TGCTTGGTTT TCATTGATAT TGTTTTTGTG
  R
  TGTTGAGGAA TGGATCCAAG TCCTTTTTAG TAGAGTCAAG TACCTCATCA CAGAGGTCCA
  TCTTTTGAAC CAGGCTGAAG GTGTTAATAT TAAATTTTCC AGTTGGCTAG ACTGTCTGTC
  ATGTCCTAGA TCAGTGACTC TCAACCTTCT TAATATTATG ACTCTTTAAT ACAGTTCCTC
  ATATTGTGGC AATGCCCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60375951	NES15879791	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50566499					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60375951	NES15879791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18477025 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65503	predicted gene, 65503	within coordinates
Rr573897	regulatory region 573897	445 bp distal