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rs50566875 SNP Detail
Summary
  • ID
    rs50566875
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr11:116743871 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTCGT GGGTAGGGAG GGAGCCGCAA
    S
    GCCGCCGCAG AGCACCCGAA CCTGA                                      
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323867027 CHEV_11_116714359 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs50566875 SNP C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:116743871 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4197 CpG island 4197 within coordinates
Mfsd11 major facilitator superfamily domain containing 11 within coordinates
Rr246191 regulatory region 246191 within coordinates
Rr403146 regulatory region 403146 within coordinates
Rr403147 regulatory region 403147 501 bp upstream
Srsf2 serine and arginine-rich splicing factor 2 within coordinates
Tssr106000 transcription start site region 106000 825 bp downstream
Tssr106001 transcription start site region 106001 471 bp downstream
Tssr106002 transcription start site region 106002 209 bp upstream
Tssr106003 transcription start site region 106003 412 bp upstream
Tssr106004 transcription start site region 106004 707 bp upstream
Tssr112001 transcription start site region 112001 1851 bp upstream
Tssr112002 transcription start site region 112002 1774 bp upstream
Tssr112003 transcription start site region 112003 1730 bp upstream
Tssr112004 transcription start site region 112004 1570 bp upstream
Tssr112005 transcription start site region 112005 892 bp upstream
Tssr112006 transcription start site region 112006 853 bp upstream
Tssr112007 transcription start site region 112007 787 bp upstream
Tssr112008 transcription start site region 112008 681 bp upstream
Tssr112009 transcription start site region 112009 589 bp upstream
Tssr112010 transcription start site region 112010 38 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory