rs50567114 SNP Detail

Summary

• ID
  rs50567114
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7676886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GCCACTTACT TTAACTCCCG
  C
  GAGTTTAATA TTTTCATATT TTCTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss134559902	ENSMUSSNP4994161	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320643278	CHEV_3_7611826	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50567114					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7676886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	875 bp proximal
Gm16685	predicted gene, 16685	879 bp upstream
Il7	interleukin 7	within coordinates
Rr77757	regulatory region 77757	514 bp proximal
Tssr28303	transcription start site region 28303	876 bp upstream
Tssr32541	transcription start site region 32541	1751 bp downstream
Tssr32542	transcription start site region 32542	1816 bp downstream
Tssr32543	transcription start site region 32543	1868 bp downstream
Tssr32544	transcription start site region 32544	1899 bp downstream
Tssr32545	transcription start site region 32545	1912 bp downstream
Tssr32546	transcription start site region 32546	1945 bp downstream