rs50568502 SNP Detail

Summary

• ID
  rs50568502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48409190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC TTTGAAACTT GCAACACAGA
  Y
  ACCCACTTAC AGTAGCTACT ACCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss61394040	NES16775886	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C		T	C		C	T	C
ss136455014	ENSMUSSNP2700917	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss322954401	CHEV_9_48305995	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs50568502					SNP	T	T	T	T	T	C	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394040	NES16775886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48409190 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	1533 bp upstream
Cpgi21716	CpG island 21716	1870 bp distal
Gm5617	predicted gene 5617	1918 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rr195326	regulatory region 195326	990 bp distal
Rr206379	regulatory region 206379	1389 bp distal
Tssr2862	transcription start site region 2862	1992 bp upstream
Tssr84994	transcription start site region 84994	1980 bp downstream