rs50571142 SNP Detail

Summary

• ID
  rs50571142
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20209924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACTCCC ATAGAAAGCC
  CCAGTGCCTT TAGCATACTG GTTCTGGATA AAGGGTAGTA AGTTCCCGTA ATTCTGCTTA
  GGTAATTCAG TTGTTTCGGT TCATCTATTT CACAAATCTT GAAGGCCAAT TTGTCATTTC
  AGGGGGGAAG TTGAGAAATA CTTTTCTAAT GTAGCCTGCA CCTTGCAAAC ACAATTCTCC
  M
  TCCCACCCAC TCGGCCCAAG CACAGCAATG GTGGATCGGC GCTCTGTAAA TCTTTTCTCA
  ATAATGAACG GTGACAATAT CAACTCAAAG CAGGAAACAG ATACTGAAGA ATAGGGAAAG
  ACAGCACTGC AATCCTCAAT ATAGTCCTCA ACTTACAGTC GTTGCTGAAC TTCCAATTTC
  CAACTTCATA TTAGTTCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134671662	ENSMUSSNP2836517	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50571142					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20209924 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	487 bp distal
Gyg1	glycogenin 1	696 bp upstream
Rr574068	regulatory region 574068	1154 bp distal
Rr574069	regulatory region 574069	91 bp distal
Rr574070	regulatory region 574070	496 bp distal
Tssr841	transcription start site region 841	688 bp upstream
Tssr32710	transcription start site region 32710	638 bp upstream