rs50571879 SNP Detail

Summary

• ID
  rs50571879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81490906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGATGGT GTGGGAGGAG
  ACACACAGGA CCTCGAGCTT TGTCACCCTG GACTGGGTGG GGCAGTCTGA ACTCCAGGAT
  TCTTCTCAGC CCCACAGCCA GGGGAGAAGT TGCCTTTGAC ACATGGAGTG TCAGCTGCTT
  GTGTAGATGC TGGATGTTCC TCAAAGCACC TTATGCCAAA AATACGAGCT TTGGGAGAAG
  Y
  GGGACTCCAT CGTCTCTAGG GAGTAGTGAA TCCCATAATC CTCTGCTGTG ACCTATGAGC
  TATTTGTCAT GACCGTGCAA TCTTTTCGAA GGCTCGTCCT GAACAATGCA ATTCTAGCTA
  GCCATACCTC TGTGGCTGTC ACTCCACATA GCTGCTACAA CCAGCCCAGC TGACACCCTG
  TCTGCCTCTA CTATCTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63200489	NES17463083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50571879					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200489	NES17463083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81490906 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	799 bp proximal
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	822 bp proximal
Gm30288	predicted gene, 30288	within coordinates
Rr347597	regulatory region 347597	1506 bp distal
Rr393975	regulatory region 393975	1889 bp downstream