rs50571967 SNP Detail

Summary

• ID
  rs50571967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12502502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCATCC TCTTGCCCTT
  GGGCATACAG TCCCGCAGTT TGTTACTGTG CGGAGCTAGA CCCTGAGGTC TCCAGATGGG
  ATCAGAGGGC TTTCAACACC CCAGCCGGGC CACTGATCGG TGATGGTCTT CCTTGCCCTC
  CGTTTCCTTC TTCTTCCTTG CCCTCCTTGT CCTGTGCCAG TCTCTCGCCT TCATCTATGC
  Y
  TTCTCTAACC TCTTGTCTTT TCTCCAAATG TATTCCTTGC CCCCCACCAC ACTGCCTGAT
  ACAGATTCTT TAGTTTGATC TCCAACTTTT TATTTAAACC AACTGGCACG GCTTGTGAAT
  GCTTTAAAAA CACATTCTAA TAAACTAAGT GCTATCTAGG GAATAGGGAG AGCACAGAGG
  CAGAGCAGGA GCTGTGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60571598	NES16043280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C	T		C
ss322498726	CHEV_8_12452502	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs50571967					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60571598	NES16043280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12502502 () rs orientation: forward

Symbol	Name	Function Class
Gm56835	predicted gene, 56835	within coordinates
Rr381713	regulatory region 381713	1429 bp upstream