rs50572086 SNP Detail

Summary

• ID
  rs50572086
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:50194416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAAAAC TGAGGAGTGG
  AGAGGAAAGG AGGGTGAACG GCTCTGTCTA GTGTTAGTCC AGTTTGTCCT TGCTTGTCCG
  TGGTAGGGTG AATCTTACCA GGGATTCACG GAGCTCTAAA GGTTGATCAA AGTCCCAGGT
  GATGAGATTA TTCCGACACT AATATGCAAT CCGTGAGGTT TTCTTTTGCA TCTTCCCTCG
  M
  AGCTGTTTGT ATCAATGCCT TCTGATCAAC ATATGGGCTC CTTTCCTTCT AGAGAAGACC
  AAGTCTCAAT AAGGAAGGGT GCACACACAC TTAAGCAAAC TAAGGCATCG CTGAGTGCTT
  GACCATTGCG TCGTGAAGAC AGTCGTTTTA ACAAACCAGA AAGACAAAAG ACAGAATTTA
  TGCTCAACTA AGCAGATCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146531274	ENSMUSSNP5767463	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50572086					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:50194416 () rs orientation: forward

Symbol	Name	Function Class
Gm13483	predicted gene 13483	within coordinates
Gm74801	predicted gene, 74801	within coordinates
Rr556732	regulatory region 556732	531 bp proximal
Rr556733	regulatory region 556733	881 bp proximal
Tssr17697	transcription start site region 17697	1112 bp downstream