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rs50572846 SNP Detail
Summary
  • ID
    rs50572846
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr12:85151232 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCCAACCCA GGGCCCCTCT
    CCTGAGAGGC TGCTCACCTT TCAGATATCC CAGCGAGCTG AGCTCCCAAA GCGCTGCCCA
    AGTTGGGGAA AGGGATGGCT GGCTGCTCAG GGGGCCAGCT CAGGCATGCG CAGTTCCGCT
    CAGGCTATGT CTCCCTTCTG TGGTGAGTAC AGATTTAGGC CACAGCATAC TCCAACCGGG
    W
    CAAGGAAACC AACTGGAAGA GCAGATGGGT TCAGGGGAGC CCTTGGGTGA AGGGCATCTT
    GGGAAGCCTG AGAGATGTTA AATCACTCCC ATGACTGTCA CTAAAGTGCG ATTCGAATTT
    ATACCAGAAA GTTTATTCCT ATTTCCTTGA TGACGCTCCT GCCAGCTTCT TGTTGGGACG
    AATTAGGATT GCTTTTGCTC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52449547 NES15419810 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A T A A T A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs50572846 SNP A A A A A A A A A A T A A T A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52449547 NES15419810 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:85151232 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Prox2 prospero homeobox 2 within coordinates
Rr264587 regulatory region 264587 1029 bp distal
Rr265685 regulatory region 265685 1768 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory