rs50573221 SNP Detail

Summary

• ID
  rs50573221
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG AAAGGGAGGT GAAAAATGCC
  W
  CCAGTCCCTG AGCAAAAAAA CCCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133164111	ENSMUSSNP3600590	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss321793655	CHEV_6_48503204	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50573221					SNP	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1252 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	799 bp downstream
Lrrc61	leucine rich repeat containing 61	1593 bp upstream
Rr399635	regulatory region 399635	1313 bp upstream
Rr629686	regulatory region 629686	within coordinates
Rr629687	regulatory region 629687	431 bp proximal
Rr629688	regulatory region 629688	1558 bp proximal
Rr629689	regulatory region 629689	1611 bp proximal
Tssr56137	transcription start site region 56137	1571 bp upstream
Tssr56138	transcription start site region 56138	1725 bp upstream
Tssr60734	transcription start site region 60734	1452 bp downstream
Tssr60735	transcription start site region 60735	1469 bp downstream
Tssr60736	transcription start site region 60736	1512 bp downstream