rs50573553 SNP Detail

Summary

• ID
  rs50573553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16889915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCATTGC TGGGGTACAC
  CTGGTCACAC TGAGTACCTC AGGGGATCTG TTCTTAAATC CCAGGTTGTC CTTGCATTCT
  AAAGAACCGA AGTTGTTTGT TTGGCACTCT GTGTTAGCAC AGATGCTCTG ATGTCGTTCT
  TCAGTCCCAC AAGCACAGGC ACGGATGGAG GCGACAGGGC TGGATAGTCT TAATGCATCT
  Y
  TCTTGATGGA GCGTTGAGAA ATGCTGCACC AAAAGTTTAA AATATAAAGA AGCAGCTTAT
  TTGTAGTATG TGAAACCTAA TCTTCTCATG CTAGGCTCGT GGGATGAAAG TTTTAGCTGA
  GGGTTTGGGT ACAGGAAGAG AGCTGAGCAT ACAGGGGAAG CCACTATGTT GTGGAACCCG
  GAATGAGATC GGTTGTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63671143	NES17061147	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50573553					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63671143	NES17061147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16889915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	1556 bp distal
Rr324980	regulatory region 324980	514 bp distal
Tssr137265	transcription start site region 137265	1836 bp downstream
Tssr137266	transcription start site region 137266	1812 bp downstream
Tssr137267	transcription start site region 137267	1797 bp downstream
Tssr137268	transcription start site region 137268	1776 bp downstream
Tssr137269	transcription start site region 137269	1731 bp downstream
Tssr137270	transcription start site region 137270	1715 bp downstream
Tssr137271	transcription start site region 137271	1706 bp downstream
Ypel1	yippee like 1	within coordinates