rs50573724 SNP Detail

Summary

• ID
  rs50573724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTCACCT CTTTTACTCT CCCTACCCCA GATTCTTAGC
  CATATGATCG TTCTGTGTGT CCCACCTCCA AGGTTTCTGT TTCCAGCCAT CCCTGCCGAC
  Y
  TCTAAGGTTT TGCCCTTGCT CTGACTTTCT TGCAGTCCTT GCTCTCTTGC TGACCCCACT
  AGATAATTAT TTCTTGATCC TGTCCAAAAT AGGACATTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149123069	ENSMUSSNP4366787	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322199705	CHEV_7_52072675	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50573724					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466729 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	647 bp upstream
Cpgi18994	CpG island 18994	251 bp distal
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	1232 bp downstream
Tssr66426	transcription start site region 66426	1365 bp downstream
Tssr66427	transcription start site region 66427	997 bp downstream
Tssr66428	transcription start site region 66428	971 bp downstream
Tssr66429	transcription start site region 66429	930 bp downstream
Tssr66430	transcription start site region 66430	899 bp downstream
Tssr72230	transcription start site region 72230	1648 bp upstream
Tssr72231	transcription start site region 72231	1623 bp upstream
Tssr72232	transcription start site region 72232	1379 bp upstream
Tssr72233	transcription start site region 72233	697 bp upstream
Tssr72234	transcription start site region 72234	339 bp upstream