rs50573950 SNP Detail

Summary

• ID
  rs50573950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74817336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGCTAG GGTCCGGTAG
  AGGCCCCGAG ACGTATTGTT CCCAAAAGAA TAGTCTGTGT ATGTGTACCT TTCCGTAGTC
  CTCCGTTCCG CGTCGGAGAG GAGGAGCTGG GGAAATTGAG GAGAAAGGCT TAACAGGCTA
  GGACTTCCTT TGCTGAACTT ACCCCCCCCC CCCACCCCCC AAGGCTGGTT TCTAGTGCTA
  S
  GCCACTGGAG GGATCCAGGA CCTCAGAGAG CTGACTCGGT TTTGTTTTGG TCTTGGCGTG
  TGTGGGAGCA GTTGTGATCA GAGAGAATGC TTAATTTGCC AGTCTCCATT CGCATCAGAA
  AAGCGCGAGA AATATTTTGG TGTCTGGTCT CCTTCATTAG CCAGTGTTGC TTAGGATGAC
  AGTTACAGAA GATACCTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323750069	CHEV_11_74740012	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50573950					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74817336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	66 bp distal
Gm72316	predicted gene, 72316	154 bp downstream
Rr451010	regulatory region 451010	748 bp distal
Rr451011	regulatory region 451011	677 bp distal
Rr451012	regulatory region 451012	401 bp distal
Rr451013	regulatory region 451013	481 bp distal
Rr451014	regulatory region 451014	within coordinates
Rr451015	regulatory region 451015	1520 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	within coordinates
Srr	serine racemase	562 bp upstream
Tssr102917	transcription start site region 102917	677 bp downstream
Tssr102918	transcription start site region 102918	643 bp downstream
Tssr102919	transcription start site region 102919	601 bp downstream
Tssr102920	transcription start site region 102920	377 bp downstream
Tssr102921	transcription start site region 102921	354 bp upstream
Tssr102922	transcription start site region 102922	1182 bp upstream
Tssr102923	transcription start site region 102923	1202 bp upstream
Tssr102924	transcription start site region 102924	1216 bp upstream
Tssr109155	transcription start site region 109155	794 bp upstream
Tssr109156	transcription start site region 109156	525 bp upstream
Tssr109157	transcription start site region 109157	1009 bp downstream