rs50575359 SNP Detail

Summary

• ID
  rs50575359
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164147208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAAATCG GAAATCTCTT ACAATGAAGC GTAGGTCTAC
  AGCTCTGCAG TATTGTGTCA AGCAAAGCTT TCTCGAATAT GACATCAAAA CCACAAGTCA
  S
  CACCATTCCC GTCCCCTTGC CGGTGAAGTG TTCTAGAACG GCAAGTGTGA GCCAGGGGGG
  CTTCTGGAGC ACCGCGCCTA GATCCTAGCT GGACACAGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145976368	ENSMUSSNP6699932	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50575359					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164147208 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422185	regulatory region 422185			36 bp proximal
Rr422186	regulatory region 422186			1103 bp proximal
Rr422187	regulatory region 422187			1655 bp proximal