rs50576420 SNP Detail

Summary

• ID
  rs50576420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGGCA TCTGACCTCA
  TTACAGATGG TTGTGAGCCA CCATGTGATT GCCAGGACTT GAACTCAGGA CCTTCCAAAG
  AACAGTCAGT GCTCTTACCT GCTGAGCCAT CTCGCCAGCC CATAAAATAA ACTAAGAAAA
  AAAAAATCTT AAAAAAAAAA AAAAAAGTGG GGGCCGGGTT AGGTGCCGTG GGCAAGGTCT
  R
  GTAGCCCATA CCTTTAATCC CAGTCCTTGG GAGGCAGAGG CGGGCAGCCT CTTTGGAGTT
  CAAGGCCAGC CAGGGCCATA GTGAAAACCC CTTTCAAGGA AACAACAAAC CACCACGCCA
  ATCCAAAAAG AAAAATCTAG GGAAAGTGAC CTGCCTGAGC TGCAACTTTG ACTCATATTT
  TTGGGGGGGT TCTGGACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144477326	ENSMUSSNP2088307	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321692401	CHEV_5_130362035	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50576420					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915006 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	802 bp proximal
Rr399383	regulatory region 399383	1043 bp upstream
Rr621372	regulatory region 621372	40 bp proximal
Rr621373	regulatory region 621373	1295 bp proximal
Tssr53498	transcription start site region 53498	974 bp downstream
Tssr53499	transcription start site region 53499	1123 bp downstream
Tssr53500	transcription start site region 53500	1251 bp downstream
Tssr53501	transcription start site region 53501	1277 bp downstream