rs50576649 SNP Detail

Summary

• ID
  rs50576649
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72535978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCTGAA CTGCTAATTC
  CAGATGACTG CTTTGTTCTG GACAACGGGC TGTGTGGCAA AATCTACATC TGGAAGGGTA
  TGTATGGCTC CTCTGTGTGA GCCTGAGGGC ACCGCAGCTG CTCTGAACCC AGCGGGCTCA
  GCCATCTCTG AAAACCTCAG CCCATCTCTA TCTCAGAACT TCAAGGGCCT GTTTAGTATA
  C
  GGCTGGGCCC ATCCCAGACA TTCAGATTCA TCTGGTCTGG CTTGGAGCCT GACCACCTGT
  ATATTTAACA TGTTCCCAGG GCTTGCCTGA GGGGCGTTGA GAACTCTTGG CCCATGTCCA
  GGCCTTCAGG GCTCTGCAGT GCCTGATCTT GAGGTTCTTT ATTAACTATA ATAGAATTAA
  ATAGAATTTA AATAGATGGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133285622	ENSMUSSNP2465126	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50576649					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72535978 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57147	transcription start site region 57147	1652 bp downstream
Tssr57148	transcription start site region 57148	308 bp downstream
Tssr57149	transcription start site region 57149	139 bp downstream
Tssr61469	transcription start site region 61469	1180 bp upstream