rs50578408 SNP Detail

Summary

• ID
  rs50578408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:36571559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGTGCAAGG CTGTGCGGTG GAGCTGGGAG CATAAACAGA
  AAATTAGGCC AAGAGAGCAG AGCTACTTCC TAGAGGAACC AACTCCCTCC GCCACACCCT
  Y
  TGTTCCTAGA AGAGGTCAGA GTTACCCCGT GTCTCTGGTA AGGACTGAAG TGTTCAAATG
  GTATACACAG ATGTCATGAG CTCATTCACC CGCCCTACTT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148927553	ENSMUSSNP1266262	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50578408					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36571559 () rs orientation: forward

Symbol	Name	Function Class
Ankrd23	ankyrin repeat domain 23	Intron
Gm42417	predicted gene, 42417	Intron
Rr409336	regulatory region 409336	1133 bp proximal