rs50579163 SNP Detail

Summary

• ID
  rs50579163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27252335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGGAAT TAGACATCTT
  CTGATCTCCT CGGGTAAATG CAGTCACAGA TACTCAATTA ATTGTAAACA AACAAAAAAA
  CAAAAATTAC TTCTTAAAGG AGGGGGCGAT GTGAGAGAGG TCATGGCGTC AGAAGGGGAG
  GGGTGGTGAC GATTTAAGTG GGGTATGATT TAAGAGAAGG GATGAGGGCA CCTAAGTGGG
  Y
  CAAGGACGAT ATAGAAGAGA TGCATTATAG ACGAGAGGGT GACACAGGGA GGGCAGCCAA
  GGTGTCGCGC ACCAGATCGC ACAGTACCTG CACGTCAGAG TCTTCTACTC CAGAACCTAG
  CCCCGCCTTC CCGCCCACCT GTGCGCAGGC GCAGTCGCGC TAGACTGCGG GCAGGGTGGG
  GGCTAGACTT GATCCTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60985712	NES16135700	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50579163					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60985712	NES16135700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27252335 () rs orientation: forward

Symbol	Name	Function Class
2310022A10Rik	RIKEN cDNA 2310022A10 gene	323 bp upstream
Cpgi18668	CpG island 18668	within coordinates
Pld3	phospholipase D family member 3	within coordinates
Rr167329	regulatory region 167329	within coordinates
Tssr65296	transcription start site region 65296	334 bp upstream
Tssr71425	transcription start site region 71425	104 bp downstream
Tssr71426	transcription start site region 71426	194 bp downstream
Tssr71427	transcription start site region 71427	228 bp downstream