rs50579191 SNP Detail

Summary

• ID
  rs50579191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153331176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGCAGA CACAGGACTA
  CATACTAATA GTGCTTGCCT AACATGCCAC AGGGCCTGGG TTTTCCAGGA TTTCTTGTTC
  CCCAAAGAAC TCTAGCAACT TACTGGAAAT TTCAAAAATT ATCAAAAGCA CCTGTAACTT
  TACATACTTT GGGATACATG TTAATGGGAA GAACTGGCCA ACTTCTCTAC ACCTAAATAC
  Y
  GAGTCATACA TTATAGGTCT CACCTACCAT TGCCTAAATG TGTTCAAGGC CTCTATAGCT
  TTTATTTGGC CTTACTTTTC CTGATGCACC CACAACCCCT GGAAACTAAT TTGGAATAGA
  AAATGCTGGC CTTAGTCTTT TGTTTTCAAA GACAAATATT TTAACTAAAA TCAGATGTTT
  TTCACCAGAG TTACTAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60821088	NES16435275	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50579191					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60821088	NES16435275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153331176 () rs orientation: forward

Symbol	Name	Function Class
Dhx9	DExH-box helicase 9	328 bp downstream
Rr420677	regulatory region 420677	1580 bp distal