rs50581065 SNP Detail

Summary

• ID
  rs50581065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55205645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG GGCTCAGCAC TCTCAGTAAT
  R
  TGGTGTCTCC CCAAGGTCGC CAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52723017	NES15567935	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	G		G
ss139574339	ENSMUSSNP4415692	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss324641228	CHEV_14_55587025	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50581065					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723017	NES15567935	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55205645 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	570 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1261 bp upstream
Rr407057	regulatory region 407057	405 bp distal
Rr492378	regulatory region 492378	1594 bp distal
Rr492379	regulatory region 492379	1057 bp distal
Rr492380	regulatory region 492380	47 bp proximal
Rr492381	regulatory region 492381	1473 bp proximal
Tssr4419	transcription start site region 4419	1886 bp upstream
Tssr4420	transcription start site region 4420	1773 bp upstream
Tssr4421	transcription start site region 4421	1767 bp upstream
Tssr4422	transcription start site region 4422	1715 bp upstream
Tssr4423	transcription start site region 4423	1689 bp upstream
Tssr4424	transcription start site region 4424	1651 bp upstream
Tssr4425	transcription start site region 4425	1538 bp upstream
Tssr125718	transcription start site region 125718	484 bp upstream
Tssr125719	transcription start site region 125719	563 bp upstream
Tssr125720	transcription start site region 125720	593 bp upstream
Tssr125721	transcription start site region 125721	613 bp upstream
Tssr125722	transcription start site region 125722	1038 bp upstream
Tssr125723	transcription start site region 125723	1107 bp upstream
Tssr125724	transcription start site region 125724	1119 bp upstream
Tssr125725	transcription start site region 125725	1979 bp upstream
Tssr128742	transcription start site region 128742	1603 bp upstream
Tssr128743	transcription start site region 128743	1580 bp upstream
Tssr128744	transcription start site region 128744	1251 bp upstream
Tssr128745	transcription start site region 128745	966 bp upstream
Tssr128746	transcription start site region 128746	213 bp upstream
Tssr128747	transcription start site region 128747	189 bp upstream
Tssr128748	transcription start site region 128748	145 bp upstream
Tssr128749	transcription start site region 128749	114 bp upstream
Tssr128750	transcription start site region 128750	92 bp upstream
Tssr128751	transcription start site region 128751	86 bp upstream
Tssr128752	transcription start site region 128752	27 bp upstream
Tssr128753	transcription start site region 128753	153 bp downstream
Tssr128754	transcription start site region 128754	232 bp downstream