rs50581297 SNP Detail

Summary

• ID
  rs50581297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47692534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTTGGC AATGTGAGAG
  GCCAGGTAAG GTCATTGGTA AAGATGCAGC CTCAGTGACA GTTGAAGGCC CAAGACTGAA
  GAGGCCATGC AGAGGATTAG ATACTTGGAT TGAGGAGGCT TCAACAGACA AATGCATGCT
  TGAATTTCCA GGTCATAGTT CTATGGCCTT AGACAGTTTC ATTCAGTGAA GTTATCTCAG
  Y
  TTCAAAATGA GTAAAATATG TGTGTGTTGG TTAAGATGAG AAATGTCTCA TATGGTTTGA
  ACACTTGGTC CCTAGCTGTT TGGGGGGAGA TTATTGAACC TTTAGGGGCT GGAGCCTTCC
  TGGTGAAAGT ATGTCATGGT GATGGATAGT GAGTGCTTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61788737	NES17713058	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs50581297					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61788737	NES17713058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47692534 () rs orientation: forward

Symbol	Name	Function Class
Rr479106	regulatory region 479106	1691 bp distal