rs50581734 SNP Detail

Summary

• ID
  rs50581734
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83714781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCC TATAATACAA TCATAAATTG
  T
  GGAGGGATTC TCCATGTCGT TCAGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136709488	ENSMUSSNP2865482	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50581734					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83714781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	1620 bp proximal
Gm57060	predicted gene, 57060	1285 bp downstream
Rr383689	regulatory region 383689	909 bp upstream
Rr401569	regulatory region 401569	1243 bp downstream
Rr683950	regulatory region 683950	914 bp proximal
Rr683951	regulatory region 683951	1860 bp proximal
Tssr86358	transcription start site region 86358	1917 bp upstream
Tssr86359	transcription start site region 86359	1956 bp upstream
Tssr90761	transcription start site region 90761	1815 bp downstream
Ttk	Ttk protein kinase	1961 bp upstream