rs50582067 SNP Detail

Summary

• ID
  rs50582067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73293470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAGGCAG GAGCCCTTCT
  TCTCAGGATA AGGCATCTAT ACTGCTGCTT GGTTTCCTCC AAGAGGGACA GACAAGATCT
  CTAAGCAGAT TTGTACAATG AAGACAGAGA CCATGGGAGA AGCAGAAGAT GGGCAGCCAC
  GAAGACTTGC TTGCCTTCGT TGGGTTCTCG GAAGCCACTG CCCTGGCCAA GGACCAAGGA
  Y
  AGCCTGAGAA TGGTATTTGG ATCCTTTGTG AAGGCAGCTG GCATTGGGTG TCCTCATTTT
  CTCCCCAGAA CAAAAGATGC CAGGCGTCAC CCAATAACTA AGGTGGCTGT TAATCTGCTT
  TTCCAAAGCA GAACCAACCA GGGCAGTTAC ACACTCCTTT GTGTCGCTTG GTGTTCTACT
  GTTACAGAGG GATATGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62893070	NES17390925	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	T	C	T	C	C	C
ss145927736	ENSMUSSNP552966	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50582067					SNP	C	T	T	T	T	C	T	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62893070	NES17390925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73293470 () rs orientation: forward

Symbol	Name	Function Class
Gm23649	predicted gene, 23649	1323 bp upstream