rs50583431 SNP Detail

Summary

• ID
  rs50583431
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104694684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTAGAAG AGCAGCCAGT
  GCTTTTAACC ATGAGCAATC TCTCCAGCCC CAAGAGCAGG GACTTGTAAG TCTGAGTGTT
  TTGACCCCCA AACACTAACT TCTTTGAGCC TCCACGCCTC ATTAAACTGT AGATAACAAT
  AATGCCTCGT AAGAACTAAA CATGGTATGG GTGGGGAAGG ACAAGGTTCA CATAATAAAG
  M
  TTCAAGAACT GTTAGCTATG TTCGACTGTC TGTTCTTCAT TTAGACTGTA AGTTTGTTTG
  CTTATTTTTA TCTATGTTTT GTTCAAGATA GGGTTTCTTT GTGTAGCCTT GGCTGTCCTA
  GAATTAGCTA AGTAGTTTTG GGACACTAGG GTGGCCTCAA ACTCATAGAG ATCCTCCTGC
  TTTGGTCTCT CAAGAGCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431862	NES15936360	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50583431					SNP	C	C	C	C	C	A	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431862	NES15936360	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104694684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	1176 bp proximal
Gm66976	predicted gene, 66976	941 bp downstream
Ppm1j	protein phosphatase 1J	1350 bp downstream
Rhoc	ras homolog family member C	1666 bp upstream
Rr77009	regulatory region 77009	916 bp proximal
Tssr31056	transcription start site region 31056	1204 bp upstream
Tssr31057	transcription start site region 31057	1425 bp upstream
Tssr31058	transcription start site region 31058	1474 bp upstream
Tssr31059	transcription start site region 31059	1658 bp upstream