rs50583894 SNP Detail

Summary

• ID
  rs50583894
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTAGGGAGTA GTAAAGGATG GTCCATACCG ACGCAGAAGC TAATAAACAG
  W
  TTGTTAAAGA GACGTTTCTG TGTGAAGGTT CTTGACTTCA ACTTCAACTT           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132372372	ENSMUSSNP1131402	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss323735980	CHEV_11_70341143	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50583894					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418467 () rs orientation: forward

Symbol	Name	Function Class
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Tssr102729	transcription start site region 102729	1710 bp downstream
Tssr102730	transcription start site region 102730	1666 bp downstream
Tssr102731	transcription start site region 102731	1607 bp downstream
Tssr102732	transcription start site region 102732	1273 bp upstream