rs50585702 SNP Detail

Summary

• ID
  rs50585702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65107988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTATCTA GTGACAGTAC
  CTTGCTGCCA AAAGATGATT GACATTACTA AAACAAACGT ACATGCATTG TGTAATCATC
  TAGGAAAGTT CATGTATGTG GGAATTTTGA GTTTCCATTT TTATCTTTTA CATACAGCTC
  AGAAGAACCA GAAGAAAAGA AAGCACACAC AGAAGATTTG TCATCAGCAC AGATCATTGA
  Y
  GGGGATTTAC AGGCAAATCA AGCTGCATAT AATTACAGTG CCTGGTACCA GGTAAGGCTG
  CACCACTTAC TCTGTGCACT GGGGGCTCTA TACTGTATGT ATCTTTTGCA GTGGAGTGCT
  GGGATTTAAT CAGTGCCTAT TACTAATTTT ATATGTAGAT CATAACTGTG ATTCTAGTTT
  GGTGACATGT TTGCTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52441974	NES15415796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50585702					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441974	NES15415796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65107988 () rs orientation: forward

Symbol	Name	Function Class
Fkbp3	FK506 binding protein 3	1218 bp downstream
Prpf39	pre-mRNA processing factor 39	within coordinates
Tssr113604	transcription start site region 113604	517 bp upstream