rs50585999 SNP Detail

Summary

• ID
  rs50585999
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52467724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAACTT CATTCTTGCT
  CCAATGCAAA TGGGACATGT TGCCTATACC CCAGCTCTGC ATGGAGACTG AGAAGAGGGA
  CAAGTCAGGG CGAGAGAGAG GAGAAGGAGA GGGAGAGAGG GGCTTTTCTT ACGTTCCTGA
  TAGAATGTGG CCTCTCTGGC CATTACTATC CAGTTGTTGT GCCTTCTCTG TGGCAGATAT
  S
  CAAACCCTGG CATCCTCACT TATACCTATG TGAATTTTCC TAAAGTCCCA TTGGGGACTT
  GATATTTCAT AGCTGTCCCC ATCTGCTTCA AATCTTGCCT ATTAGTTGGG TTTTGCTAAG
  AGGGTCCATT TTGGCATACA ATGAGACAGG CCTCGTTGAT CGTGGTAAAT CACATCTCTA
  TCACCAAAAG CTCAGTGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60733161	NES16376321	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C	G	G	C	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50585999					SNP	G	G	G	G	C	G	C	G	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60733161	NES16376321	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52467724 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	within coordinates
Rr410861	regulatory region 410861	177 bp distal
Rr410862	regulatory region 410862	468 bp proximal
Rr410863	regulatory region 410863	1757 bp proximal