rs50586006 SNP Detail

Summary

• ID
  rs50586006
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:29223539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATAAGG AAAACAGAGA
  CAGAAAATTC CTAAAGACCA GGGATTCAAA ATTCACAGCT ATCTGGAAAT GTTTTGTCTC
  AGAAGCAAAC AACTTTTGTA TTGTGCTCTT CAAAGAACAG CATCACAAAT GATTAGTCAG
  TGCCAATGAG ACAGGCCATA AAGGAAATAT TAAACTAGAA TACTAACCAT GTAGGCAGAT
  M
  GGAAGAGAAT ACATAGAAGA CATATGTCTT ATAAAACTCA TACATTTTAA CAGGCTGATG
  CTTTGAGTAT CTGGAAAGCT CATTCCTGTG GAACATTTGC CCGGCATGTG AGCAAGAAGC
  AGCAATATGC TGGTGATGAT AATAGAACTG GTGGGCTAAT CATTCTGGAA TGTCTAGGTG
  TATCTGACTA TGTGCTGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62195773	NES17191604	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50586006					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62195773	NES17191604	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29223539 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna2d3	calcium channel, voltage-dependent, alpha2/delta subunit 3			Intron
				Noncoding-Transcript-Variant
Tssr127822	transcription start site region 127822			541 bp upstream