rs50586396 SNP Detail

Summary

• ID
  rs50586396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT CCTACAAGAT ACATTTCGAA
  R
  GTTTGATGCA GTAAAAGATC TAGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136756060	ENSMUSSNP5328221	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323056336	CHEV_9_86359149	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs50586396					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	425 bp distal
Cpgi22102	CpG island 22102	1375 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1599 bp upstream
Rr684095	regulatory region 684095	603 bp distal
Rr684096	regulatory region 684096	102 bp distal
Rr684097	regulatory region 684097	563 bp distal
Rr684098	regulatory region 684098	1122 bp proximal
Rr684099	regulatory region 684099	1539 bp proximal
Rr684100	regulatory region 684100	1623 bp proximal
Tssr86391	transcription start site region 86391	1621 bp upstream
Tssr86392	transcription start site region 86392	1631 bp upstream
Tssr86393	transcription start site region 86393	1682 bp upstream
Tssr90780	transcription start site region 90780	599 bp upstream
Tssr90781	transcription start site region 90781	584 bp upstream
Ube3d	ubiquitin protein ligase E3D	592 bp upstream