rs50586735 SNP Detail

Summary

• ID
  rs50586735
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99759323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCACCCAG TGAGGATGGG GGCTCGTTTC TCGAGTCAGA
  TGAGCATTCT TCGGGTAAAG AGGACGAAAT AACCCGCCGA GCCAACCTGC GAGCCTGTTT
  C
  CTTTGAATAA TTGCCTGGCC GATGCGAAAT GCCCTTGGGG GAAATATTTA TTAAATGGAA
  ACCATTGTCC CGGGTCCTGA AGGACTGGAG TGTGTTCCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136852126	ENSMUSSNP1624926	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323137461	CHEV_9_99777689	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50586735					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99759323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22205	CpG island 22205	800 bp distal
Gm16004	predicted gene 16004	within coordinates
Gm67910	predicted gene, 67910	546 bp downstream
Rr685463	regulatory region 685463	1542 bp distal
Rr685464	regulatory region 685464	1111 bp distal
Rr685465	regulatory region 685465	610 bp distal
Rr685466	regulatory region 685466	513 bp proximal
Sox14	SRY (sex determining region Y)-box 14	1100 bp upstream
Tssr91083	transcription start site region 91083	1077 bp upstream
Tssr91084	transcription start site region 91084	1058 bp upstream